class
|
Actinomycetes
|
|
|
|
|
|
|
|
X |
|
|
|
|
X |
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
class
|
Bacilli
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
class
|
Bacteroidia
|
X |
|
|
|
X |
|
|
X |
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
X |
|
|
|
X |
|
|
class
|
Clostridia
|
|
|
X |
|
X |
X |
|
|
|
X |
|
|
X |
|
|
|
|
|
|
|
|
|
X |
X |
|
|
X |
X |
|
class
|
Fusobacteriia
|
X |
|
|
|
|
|
|
X |
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
X |
|
|
|
X |
|
|
class
|
Methanobacteria
|
|
|
|
|
|
|
|
X |
X |
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
class
|
Spirochaetia
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
family
|
Acidaminococcaceae
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
family
|
Akkermansiaceae
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
family
|
Bacteroidaceae
|
X |
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
family
|
Barnesiellaceae
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
family
|
Bifidobacteriaceae
|
X |
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
family
|
Brachyspiraceae
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
family
|
Christensenellaceae
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
family
|
Clostridiaceae
|
X |
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
family
|
Coriobacteriaceae
|
X |
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
family
|
Corynebacteriaceae
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
family
|
Desulfomicrobiaceae
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
family
|
Desulfovibrionaceae
|
X |
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
family
|
Dysgonomonadaceae
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
family
|
Eggerthellaceae
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
family
|
Enterobacteriaceae
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
X |
X |
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
family
|
Enterococcaceae
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
family
|
Erysipelotrichaceae
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
family
|
Eubacteriaceae
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
family
|
Lachnospiraceae
|
X |
|
|
|
X |
|
|
|
|
|
|
|
X |
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
family
|
Lactobacillaceae
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
family
|
Methanobacteriaceae
|
|
|
|
|
|
X |
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
X |
|
|
|
|
family
|
Nitrobacteraceae
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
family
|
Odoribacteraceae
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
family
|
Oscillospiraceae
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
family
|
Porphyromonadaceae
|
X |
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
family
|
Prevotellaceae
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
family
|
Rikenellaceae
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
family
|
Ruminococcaceae
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
family
|
Staphylococcaceae
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
family
|
Sutterellaceae
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
family
|
Tannerellaceae
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
family
|
Veillonellaceae
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
genus
|
Acetanaerobacterium
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
genus
|
Acetivibrio
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
genus
|
Acidaminococcus
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
genus
|
Acinetobacter
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
X |
X |
|
X |
|
|
|
|
|
X |
|
|
|
X |
|
|
genus
|
Actinomyces
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
X |
|
|
|
|
X |
|
|
|
|
|
|
|
genus
|
Adlercreutzia
|
|
|
X |
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
X |
genus
|
Aeromonas
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
genus
|
Agathobacter
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
genus
|
Akkermansia
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
X |
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
genus
|
Alistipes
|
|
|
|
X |
X |
|
|
X |
|
|
|
|
X |
X |
|
|
X |
X |
X |
|
|
X |
|
|
|
X |
|
|
X |
genus
|
Alloprevotella
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
genus
|
Alternaria
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
genus
|
Anaerobutyricum
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
genus
|
Anaerofustis
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
genus
|
Anaerostipes
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
X |
|
|
X |
|
|
|
|
X |
|
|
|
|
|
|
|
genus
|
Anaerotruncus
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
genus
|
Apiotrichum
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
genus
|
Asaccharobacter
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
genus
|
Aspergillus
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
genus
|
Atopobium
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
genus
|
Bacillus
|
|
|
|
|
|
X |
|
|
|
X |
X |
|
|
|
X |
|
|
|
|
|
|
|
|
X |
X |
|
|
|
|
genus
|
Bacillus
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
genus
|
Bacteroides
|
|
X |
X |
|
X |
|
X |
X |
|
X |
|
X |
X |
X |
X |
X |
X |
X |
X |
X |
X |
X |
X |
|
|
|
|
X |
X |
genus
|
Barnesiella
|
|
|
|
X |
X |
X |
|
|
|
X |
|
|
|
X |
|
|
X |
|
|
|
|
X |
|
|
|
X |
|
|
|
genus
|
Bifidobacterium
|
|
X |
X |
X |
X |
X |
X |
X |
|
X |
X |
X |
X |
X |
X |
X |
X |
X |
|
X |
X |
X |
|
X |
X |
X |
X |
X |
X |
genus
|
Bilophila
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
genus
|
Blastocystis
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
genus
|
Blastomyces
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
genus
|
Blautia
|
|
|
|
X |
X |
|
|
|
|
|
|
|
|
X |
|
|
X |
|
|
|
|
X |
|
|
|
|
|
|
|
genus
|
Botrytis
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
genus
|
Butyricicoccus
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
genus
|
Butyricimonas
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
X |
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
genus
|
Butyrivibrio
|
|
|
X |
X |
|
|
|
|
|
|
|
|
|
X |
|
|
X |
|
|
|
|
|
X |
|
|
|
X |
|
|
genus
|
Campylobacter
|
|
|
|
X |
|
X |
|
|
|
X |
|
|
|
X |
|
|
X |
|
|
|
|
|
X |
X |
X |
X |
|
|
X |
genus
|
Candida
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
X |
X |
|
|
|
|
genus
|
Candida
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
X |
|
|
|
|
|
|
genus
|
Catenibacterium
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
X |
|
|
|
|
X |
|
|
|
|
|
|
|
genus
|
Cedecea
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
genus
|
Cetobacterium
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
genus
|
Christensenella
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
genus
|
Citrobacter
|
|
|
|
X |
|
|
|
X |
X |
X |
|
X |
|
X |
X |
|
X |
X |
|
X |
X |
|
X |
X |
X |
|
X |
X |
|
genus
|
Clonorchis
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
genus
|
Clostridioides
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
genus
|
Clostridium
|
|
X |
|
|
|
X |
X |
X |
|
X |
|
|
|
X |
X |
X |
X |
X |
|
X |
X |
X |
|
|
X |
X |
|
|
|
genus
|
Colletotrichum
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
genus
|
Collinsella
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
X |
|
|
X |
|
|
|
|
X |
|
|
|
|
|
|
|
genus
|
Coprobacillus
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
genus
|
Coprococcus
|
|
|
X |
X |
X |
|
|
|
|
|
|
|
|
X |
|
|
X |
|
|
|
|
X |
X |
|
|
|
X |
|
|
genus
|
Corynebacterium
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
genus
|
Cronobacter
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
genus
|
Cryptococcus
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
genus
|
Cryptosporidium
|
|
|
|
|
|
X |
|
X |
|
X |
|
|
|
X |
|
|
X |
|
|
|
|
|
X |
X |
X |
|
X |
|
|
genus
|
Cytomegalovirus
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
genus
|
Dermabacter
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
genus
|
Desulfobacter
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
genus
|
Desulfovibrio
|
|
|
|
|
X |
|
|
X |
|
|
|
X |
|
X |
|
|
X |
X |
|
|
|
|
|
|
|
|
|
|
|
genus
|
Desulfurivibrio
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
genus
|
Desulfurococcus
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
genus
|
Desulfuromonas
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
genus
|
Dialister
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
genus
|
Diphyllobothrium
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
genus
|
Dorea
|
|
|
|
X |
X |
|
|
X |
|
|
|
|
X |
X |
|
|
X |
|
X |
|
|
X |
|
|
|
|
|
|
|
genus
|
Dysgonomonas
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
genus
|
Dysosmobacter
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
genus
|
Edwardsiella
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
genus
|
Edwardsiella
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
genus
|
Eggerthella
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
X |
genus
|
Encephalitozoon
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
genus
|
Enterobacter
|
|
|
X |
X |
|
X |
|
X |
X |
X |
|
|
|
X |
|
|
X |
X |
|
X |
X |
|
X |
X |
X |
|
X |
|
|
genus
|
Enterobius
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
genus
|
Enterocloster
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
genus
|
Enterococcus
|
|
X |
X |
X |
|
X |
X |
X |
X |
X |
|
|
|
X |
X |
X |
X |
X |
|
X |
X |
X |
X |
X |
X |
|
X |
|
|
genus
|
Escherichia
|
|
|
|
|
|
X |
|
X |
X |
X |
|
|
X |
X |
|
|
X |
X |
|
|
|
X |
|
X |
X |
X |
|
|
|
genus
|
Ethanoligenens
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
X |
genus
|
Eubacterium
|
|
X |
X |
|
|
|
|
X |
|
|
|
|
|
X |
|
|
X |
X |
X |
|
|
X |
|
|
|
|
|
|
X |
genus
|
Exophiala
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
genus
|
Faecalibacillus
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
genus
|
Faecalibacterium
|
|
|
|
X |
X |
|
|
|
|
|
|
|
|
X |
|
|
X |
|
|
|
|
X |
|
|
|
|
|
|
|
genus
|
Faecalitalea
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
genus
|
Flavonifractor
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
genus
|
Fonsecaea
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
genus
|
Fusarium
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
genus
|
Fusobacterium
|
|
|
X |
X |
|
X |
|
|
|
X |
|
|
|
X |
|
|
X |
|
|
|
|
|
X |
X |
X |
X |
X |
|
|
genus
|
Geotrichum
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
X |
|
|
|
|
genus
|
Giardia
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
X |
|
|
|
|
|
genus
|
Gordonibacter
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
genus
|
Grosmannia
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
genus
|
Haemophilus
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
X |
|
|
|
X |
|
|
genus
|
Hafnia
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
X |
|
X |
|
|
X |
|
|
|
X |
|
|
genus
|
Halobaculum
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
genus
|
Haloferax
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
genus
|
Halogeometricum
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
genus
|
Halorussus
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
genus
|
Halovivax
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
genus
|
Helicobacter
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
X |
|
|
|
|
|
|
genus
|
Holdemania
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
genus
|
Howardella
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
genus
|
Hungatella
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
genus
|
Hymenolepis
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
genus
|
Hymenolepis
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
genus
|
Intestinimonas
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
genus
|
Klebsiella
|
|
X |
X |
|
|
X |
|
X |
X |
X |
|
|
|
|
X |
|
X |
X |
|
X |
X |
X |
X |
X |
X |
|
X |
X |
|
genus
|
Kluyvera
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
X |
X |
|
|
|
|
|
|
|
|
genus
|
Lachnoclostridium
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
X |
genus
|
Lachnospira
|
|
|
|
X |
X |
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
genus
|
Lacticaseibacillus
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
genus
|
Lactiplantibacillus
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
genus
|
Lactobacillus
|
|
X |
X |
X |
|
X |
X |
X |
|
X |
X |
X |
X |
X |
X |
X |
X |
X |
|
X |
X |
X |
X |
X |
X |
X |
X |
X |
X |
genus
|
Lactococcus
|
|
|
|
X |
X |
|
|
|
|
|
|
|
|
X |
|
|
X |
|
|
|
|
X |
|
|
|
|
|
|
|
genus
|
Lactonifactor
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
genus
|
Leuconostoc
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
genus
|
Ligilactobacillus
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
genus
|
Limosilactobacillus
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
genus
|
Listeria
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
genus
|
Malassezia
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
genus
|
Marvinbryantia
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
genus
|
Mediterraneibacter
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
genus
|
Megamonas
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
genus
|
Megasphaera
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
genus
|
Methanobrevibacter
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
X |
|
|
X |
X |
|
|
|
|
X |
|
|
|
X |
|
|
genus
|
Methanocella
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
genus
|
Methanocorpusculum
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
genus
|
Methanoculleus
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
genus
|
Methanofervidicoccus
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
genus
|
Methanofollis
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
genus
|
Methanomassiliicoccus
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
genus
|
Methanosarcina
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
genus
|
Methanosphaera
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
genus
|
Methanothrix
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
genus
|
Micrococcus
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
genus
|
Mitsuokella
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
genus
|
Morganella
|
|
|
X |
|
|
X |
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
X |
|
X |
X |
X |
|
X |
|
|
genus
|
Moryella
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
genus
|
Mycoplana
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
genus
|
Neurospora
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
genus
|
Nitrosopumilus
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
genus
|
Norovirus
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
genus
|
Odoribacter
|
|
|
|
|
X |
X |
|
|
|
X |
|
|
|
X |
|
|
X |
|
|
|
|
X |
|
|
|
X |
|
|
X |
genus
|
Olsenella
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
X |
|
|
|
|
|
|
|
genus
|
Opisthorchis
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
genus
|
Oscillibacter
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
X |
X |
|
|
|
X |
|
|
|
|
|
|
X |
genus
|
Oscillospira
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
genus
|
Oxalobacter
|
|
|
|
X |
X |
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
genus
|
Paenibacillus
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
genus
|
Papillibacter
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
genus
|
Parabacteroides
|
|
X |
|
|
X |
|
|
|
|
|
|
|
X |
X |
|
|
X |
|
|
|
|
X |
|
|
|
|
|
|
X |
genus
|
Paraprevotella
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
genus
|
Parasutterella
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
genus
|
Pediococcus
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
genus
|
Penicillium
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
genus
|
Peptoclostridium
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
genus
|
Peptostreptococcus
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
genus
|
Phascolarctobacterium
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
genus
|
Phocaeicola
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
genus
|
Phycomyces
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
genus
|
Porphyromonas
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
genus
|
Prevotella
|
|
|
X |
X |
|
X |
|
X |
|
X |
|
|
X |
X |
|
|
X |
X |
|
|
|
X |
X |
X |
|
X |
X |
|
|
genus
|
Propionibacterium
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
genus
|
Proteus
|
|
|
X |
|
|
X |
X |
|
|
X |
|
|
|
|
X |
X |
|
|
|
X |
X |
|
|
X |
X |
|
|
X |
|
genus
|
Proteus
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
X |
|
|
genus
|
Providencia
|
|
|
|
|
|
|
|
X |
X |
|
|
|
|
|
X |
|
|
X |
|
X |
X |
|
X |
|
|
|
X |
|
|
genus
|
Pseudobutyrivibrio
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
genus
|
Pseudoflavonifractor
|
|
|
|
X |
|
X |
|
|
|
X |
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
genus
|
Pseudomonas
|
|
|
|
X |
|
X |
X |
X |
|
X |
|
|
|
|
X |
X |
X |
X |
|
X |
X |
|
|
X |
X |
|
X |
X |
|
genus
|
Pyricularia
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
genus
|
Raoultella
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
genus
|
Rhizobium
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
genus
|
Rhodotorula
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
X |
X |
|
|
|
|
genus
|
Roseburia
|
|
|
X |
X |
X |
X |
|
X |
|
X |
|
|
|
X |
|
|
X |
X |
X |
|
|
X |
X |
|
|
X |
X |
|
X |
genus
|
Rothia
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
genus
|
Rothia
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
genus
|
Ruminococcus
|
|
|
|
X |
|
|
|
X |
|
X |
|
|
|
X |
|
|
X |
X |
|
|
|
X |
X |
|
|
|
X |
|
|
genus
|
Ruthenibacterium
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
genus
|
Saccharomyces
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
genus
|
Salmonella
|
|
|
|
X |
|
X |
|
|
|
X |
|
|
X |
X |
|
|
X |
|
|
|
|
|
|
X |
X |
|
|
|
|
genus
|
Schaalia
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
genus
|
Schistosoma
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
genus
|
Selenomonas
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
genus
|
Serratia
|
|
|
X |
|
|
|
|
X |
|
|
|
|
|
|
X |
|
|
X |
|
X |
X |
|
X |
|
|
|
X |
|
|
genus
|
Shigella
|
|
|
|
|
|
X |
|
|
|
X |
|
|
X |
X |
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
genus
|
Simiaoa
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
genus
|
Slackia
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
X |
|
|
|
|
|
|
genus
|
Sphingomonas
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
genus
|
Sporobacter
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
genus
|
Staphylococcus
|
|
|
|
X |
|
X |
|
|
|
X |
|
|
|
X |
|
|
X |
|
|
|
|
X |
|
X |
X |
|
|
|
|
genus
|
Streptococcus
|
|
X |
|
|
X |
X |
|
X |
|
X |
X |
|
X |
|
X |
|
X |
X |
|
|
|
X |
|
X |
X |
|
|
|
X |
genus
|
Streptomyces
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
genus
|
Strongyloides
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
genus
|
Subdoligranulum
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
genus
|
Sulfolobus
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
genus
|
Sulfuricurvum
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
genus
|
Sutterella
|
|
|
|
X |
|
|
|
X |
X |
|
|
|
|
|
|
|
|
X |
|
|
|
X |
|
|
|
|
|
|
|
genus
|
Syntrophococcus
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
genus
|
Tannerella
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
X |
genus
|
Thermococcus
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
genus
|
Thomasclavelia
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
genus
|
Tistrella
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
genus
|
Treponema
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
genus
|
Trichoderma
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
genus
|
Trichosporon
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
genus
|
Trichostrongylus
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
genus
|
Turicibacter
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
genus
|
Tyzzerella
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
genus
|
Ustilago
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
genus
|
Veillonella
|
|
|
|
X |
|
X |
|
|
|
X |
|
X |
X |
X |
|
|
X |
|
|
|
|
|
|
|
|
X |
|
|
X |
genus
|
Vescimonas
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
genus
|
Vibrio
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
genus
|
Weissella
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
genus
|
Wickerhamomyces
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
genus
|
Wujia
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
genus
|
Yersinia
|
|
|
|
X |
|
|
|
|
|
|
|
|
X |
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
genus
|
Yokenella
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
genus
|
Zygosaccharomyces
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
no rank
|
Human gammaherpesvirus 4
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
order
|
Actinomycetales
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
order
|
Bacteroidales
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
order
|
Burkholderiales
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
order
|
Enterobacterales
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
X |
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
phylum
|
Actinomycetota
|
X |
|
X |
|
X |
X |
|
X |
X |
X |
|
|
X |
|
|
|
X |
X |
|
|
|
|
X |
|
|
|
X |
|
X |
phylum
|
Ascomycota
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
phylum
|
Bacillota
|
X |
|
X |
|
X |
X |
|
X |
X |
X |
|
|
X |
X |
|
|
X |
X |
X |
|
|
|
X |
X |
|
|
X |
|
X |
phylum
|
Bacteroidota
|
X |
|
X |
|
X |
X |
|
X |
X |
X |
|
|
|
X |
|
|
X |
X |
|
|
|
|
|
X |
|
|
|
|
X |
phylum
|
Campylobacterota
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
phylum
|
Candidatus Saccharibacteria
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
phylum
|
Cyanobacteriota
|
|
|
|
|
|
|
|
X |
X |
|
|
|
|
|
|
|
|
X |
X |
|
|
|
|
|
|
|
|
|
|
phylum
|
Euryarchaeota
|
X |
|
|
|
X |
X |
|
X |
X |
X |
|
|
|
|
|
|
|
X |
X |
|
|
|
|
|
|
|
|
|
|
phylum
|
Fusobacteriota
|
X |
|
X |
|
|
X |
|
X |
X |
X |
|
|
|
X |
|
|
X |
X |
X |
|
|
|
|
|
|
|
|
|
|
phylum
|
Lentisphaerota
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
phylum
|
Microsporidia
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
phylum
|
Mycoplasmatota
|
X |
|
|
|
|
|
|
X |
X |
|
|
|
|
|
|
|
|
X |
X |
|
|
|
|
|
|
|
|
|
|
phylum
|
Pseudomonadota
|
X |
|
X |
|
X |
X |
|
X |
X |
X |
|
|
X |
X |
|
|
X |
X |
X |
|
|
|
X |
|
|
|
|
|
X |
phylum
|
Spirochaetota
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
phylum
|
Synergistota
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
phylum
|
Thermodesulfobacteriota
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
phylum
|
Verrucomicrobiota
|
X |
|
X |
|
X |
X |
|
X |
X |
X |
|
|
|
|
|
|
X |
X |
X |
|
|
|
X |
|
|
|
X |
|
|
species
|
[Bacteroides] pectinophilus
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
species
|
[Clostridium] methylpentosum
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
species
|
[Clostridium] scindens
|
|
|
|
|
|
|
|
X |
X |
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
species
|
[Clostridium] symbiosum
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
species
|
[Eubacterium] siraeum
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
species
|
[Ruminococcus] gnavus
|
|
|
|
|
|
|
|
|
|
|
|
X |
X |
X |
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
species
|
[Ruminococcus] lactaris
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
species
|
[Ruminococcus] torques
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
species
|
Acinetobacter junii
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
species
|
Adlercreutzia equolifaciens
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
species
|
Agathobacter rectalis
|
|
|
|
|
|
|
|
|
|
|
|
X |
X |
X |
|
|
|
|
|
|
|
|
X |
|
|
|
X |
|
|
species
|
Akkermansia muciniphila
|
|
|
X |
|
X |
X |
X |
X |
|
X |
|
X |
X |
X |
|
X |
X |
X |
|
|
|
|
X |
X |
X |
X |
X |
|
|
species
|
Alistipes finegoldii
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
species
|
Alistipes indistinctus
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
species
|
Alistipes onderdonkii
|
|
|
|
|
X |
|
|
|
|
|
|
|
X |
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
species
|
Alistipes shahii
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
species
|
Anaerobutyricum hallii
|
|
|
X |
|
X |
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
X |
|
|
|
X |
|
|
species
|
Anaerostipes caccae
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
species
|
Anaerotruncus colihominis
|
|
|
|
|
|
X |
|
X |
|
X |
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
X |
|
|
|
species
|
Aspergillus clavatus
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
species
|
Aspergillus fumigatus
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
species
|
Aspergillus niger
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
species
|
Aspergillus tanneri
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
species
|
Bacillus subtilis
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
species
|
Bacteroides caccae
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
species
|
Bacteroides finegoldii
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
species
|
Bacteroides fragilis
|
|
X |
|
|
X |
X |
|
|
|
X |
|
X |
X |
|
|
|
X |
|
|
|
|
|
|
X |
X |
X |
|
|
|
species
|
Bacteroides intestinalis
|
|
X |
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
species
|
Bacteroides ovatus
|
|
X |
|
|
X |
|
|
|
|
|
|
X |
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
X |
|
|
species
|
Bacteroides salyersiae
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
species
|
Bacteroides stercoris
|
|
X |
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
species
|
Bacteroides thetaiotaomicron
|
|
|
|
|
X |
|
|
|
|
|
|
X |
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
species
|
Bacteroides uniformis
|
|
|
|
|
X |
X |
|
|
|
X |
|
X |
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
X |
|
|
species
|
Bacteroides zoogleoformans
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
species
|
Barnesiella intestinihominis
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
species
|
Bifidobacterium adolescentis
|
|
|
|
|
X |
|
X |
X |
X |
|
|
|
|
X |
|
|
X |
X |
|
|
|
|
|
|
|
|
|
|
|
species
|
Bifidobacterium animalis
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
species
|
Bifidobacterium bifidum
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
species
|
Bifidobacterium breve
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
species
|
Bifidobacterium catenulatum
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
species
|
Bifidobacterium dentium
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
X |
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
species
|
Bifidobacterium longum
|
|
X |
|
|
X |
X |
|
|
|
X |
|
|
|
X |
|
|
X |
|
|
|
|
|
|
|
X |
|
|
|
|
species
|
Bifidobacterium pseudocatenulatum
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
species
|
Bilophila wadsworthia
|
|
|
X |
|
X |
|
|
X |
X |
|
|
X |
|
|
|
|
|
X |
|
|
|
|
X |
|
|
|
X |
|
|
species
|
Blastocystis hominis
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
X |
X |
|
X |
|
|
species
|
Blautia obeum
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
species
|
Blautia producta
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
species
|
Blautia wexlerae
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
species
|
Butyrivibrio crossotus
|
|
|
|
|
|
X |
|
X |
|
X |
|
|
|
|
|
|
|
X |
X |
|
|
|
|
|
|
X |
|
|
|
species
|
Campylobacter coli
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
species
|
Campylobacter jejuni
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
species
|
Campylobacter lari
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
species
|
Campylobacter upsaliensis
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
species
|
Candida albicans
|
|
X |
|
|
|
|
X |
X |
|
|
|
X |
|
|
|
|
|
X |
|
|
|
|
X |
X |
X |
|
X |
|
|
species
|
Candida dubliniensis
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
species
|
Candida parapsilosis
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
species
|
Candida tropicalis
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
X |
|
|
species
|
Catenibacterium mitsuokai
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
species
|
Citrobacter freundii
|
|
|
|
|
|
X |
|
|
|
X |
X |
X |
|
|
|
|
|
|
|
|
|
|
|
X |
X |
|
|
|
|
species
|
Citrobacter koseri
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
species
|
Clostridioides difficile
|
|
|
|
|
|
X |
|
X |
X |
X |
|
X |
X |
X |
|
|
X |
X |
|
|
X |
|
|
X |
X |
|
|
|
|
species
|
Clostridium butyricum
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
species
|
Clostridium perfringens
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
X |
|
|
|
|
|
X |
|
|
|
|
|
|
species
|
Clostridium sporogenes
|
|
|
X |
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
species
|
Collinsella aerofaciens
|
|
|
|
|
|
X |
|
|
|
X |
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
X |
|
|
|
species
|
Coprobacillus cateniformis
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
species
|
Coprococcus eutactus
|
|
|
|
|
|
X |
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
species
|
Cystoisospora belli
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
species
|
Desulfovibrio desulfuricans
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
species
|
Desulfovibrio piger
|
|
|
X |
|
|
X |
|
|
|
X |
|
|
|
X |
|
|
|
|
|
|
|
|
X |
|
X |
X |
X |
|
|
species
|
Dialister invisus
|
|
|
X |
|
|
|
|
|
|
|
|
|
X |
X |
|
|
|
|
|
|
|
|
X |
|
|
X |
|
|
|
species
|
Dientamoeba fragilis
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
X |
X |
|
X |
|
|
species
|
Dorea formicigenerans
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
species
|
Dorea longicatena
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
species
|
Edwardsiella tarda
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
species
|
Eggerthella lenta
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
species
|
Entamoeba histolytica
|
|
|
|
|
|
X |
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
X |
X |
X |
|
X |
|
|
species
|
Enterobacter cloacae
|
|
|
|
|
|
X |
|
|
|
X |
|
X |
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
species
|
Enterobius vermicularis
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
species
|
Enterococcus avium
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
species
|
Enterococcus faecalis
|
|
|
|
|
|
X |
|
|
|
X |
|
X |
|
|
|
|
X |
|
|
|
|
|
|
X |
X |
|
|
|
|
species
|
Enterococcus faecium
|
|
X |
|
|
|
X |
|
|
|
X |
|
X |
|
|
|
|
X |
|
|
|
|
|
|
X |
X |
|
|
|
|
species
|
Enterococcus gallinarum
|
|
X |
|
|
|
|
|
|
|
|
|
X |
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
species
|
Escherichia coli
|
|
X |
X |
|
|
X |
X |
|
|
X |
X |
X |
X |
X |
X |
X |
X |
|
|
X |
X |
|
X |
X |
|
|
X |
X |
X |
species
|
Faecalibacterium prausnitzii
|
|
|
X |
|
X |
X |
X |
X |
|
X |
|
X |
X |
X |
|
X |
X |
X |
X |
|
|
|
X |
X |
X |
|
X |
|
|
species
|
Francisella tularensis
|
|
|
X |
|
X |
|
|
|
|
X |
|
|
|
|
|
|
|
|
X |
|
|
X |
|
|
|
X |
|
|
X |
species
|
Fusobacterium nucleatum
|
|
|
|
|
|
|
|
X |
X |
|
|
X |
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
species
|
Geotrichum candidum
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
species
|
Giardia intestinalis
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
X |
|
X |
|
|
species
|
Hafnia alvei
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
X |
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
species
|
Hathewaya histolytica
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
species
|
Helicobacter pylori
|
|
|
|
|
|
X |
|
|
|
X |
|
X |
|
X |
|
|
|
|
|
|
|
|
|
X |
X |
|
X |
|
|
species
|
Heyndrickxia coagulans
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
species
|
Holdemanella biformis
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
species
|
Hungatella hathewayi
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
species
|
Klebsiella aerogenes
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
species
|
Klebsiella oxytoca
|
|
|
|
|
|
X |
|
|
|
X |
|
X |
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
species
|
Klebsiella pneumoniae
|
|
|
|
|
|
X |
|
|
|
X |
X |
X |
|
X |
|
|
X |
|
|
|
|
|
X |
X |
X |
|
|
|
|
species
|
Lacticaseibacillus casei
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
species
|
Lacticaseibacillus paracasei
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
X |
|
|
X |
X |
|
|
|
|
|
|
|
|
|
|
|
species
|
Lacticaseibacillus rhamnosus
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
species
|
Lactiplantibacillus plantarum
|
|
|
|
|
|
|
X |
X |
|
|
|
|
|
X |
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
species
|
Lactococcus lactis
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
species
|
Lancefieldella parvula
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
species
|
Latilactobacillus sakei
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
species
|
Levilactobacillus brevis
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
X |
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
species
|
Ligilactobacillus animalis
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
species
|
Ligilactobacillus murinus
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
species
|
Ligilactobacillus ruminis
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
species
|
Ligilactobacillus salivarius
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
species
|
Limosilactobacillus fermentum
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
species
|
Limosilactobacillus mucosae
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
species
|
Limosilactobacillus reuteri
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
species
|
Malassezia restricta
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
species
|
Megasphaera micronuciformis
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
species
|
Metamycoplasma hominis
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
species
|
Methanobrevibacter smithii
|
|
|
|
|
|
X |
|
X |
|
X |
|
X |
|
X |
|
|
X |
|
|
|
|
|
|
|
|
X |
|
|
|
species
|
Morganella morganii
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
X |
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
species
|
Mycobacterium avium
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
species
|
Nakaseomyces glabratus
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
species
|
Odoribacter splanchnicus
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
species
|
Oxalobacter formigenes
|
|
|
X |
|
X |
X |
|
X |
X |
X |
|
X |
|
|
|
|
|
X |
|
|
|
|
X |
|
X |
X |
|
|
|
species
|
Parabacteroides distasonis
|
|
X |
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
species
|
Parabacteroides johnsonii
|
|
|
|
|
X |
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
species
|
Parabacteroides merdae
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
species
|
Parasutterella excrementihominis
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
species
|
Pediococcus acidilactici
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
species
|
Penicillium rubens
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
species
|
Pentatrichomonas hominis
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
X |
|
|
|
|
species
|
Phocaeicola dorei
|
|
|
|
|
X |
|
|
|
|
|
|
X |
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
species
|
Phocaeicola massiliensis
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
species
|
Phocaeicola plebeius
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
species
|
Phocaeicola salanitronis
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
species
|
Phocaeicola vulgatus
|
|
X |
|
|
|
X |
|
X |
|
X |
|
X |
|
X |
|
|
X |
X |
|
|
|
|
|
|
|
|
|
|
|
species
|
Phycomyces blakesleeanus
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
species
|
Pichia kudriavzevii
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
species
|
Plesiomonas shigelloides
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
species
|
Porphyromonas gingivalis
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
species
|
Prevotella intermedia
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
species
|
Prevotella melaninogenica
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
species
|
Prevotella nigrescens
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
species
|
Propionibacterium freudenreichii
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
species
|
Proteus mirabilis
|
|
|
|
|
|
X |
|
|
|
X |
|
X |
|
X |
|
|
|
|
|
|
|
|
X |
X |
X |
|
|
|
|
species
|
Proteus vulgaris
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
species
|
Pseudomonas aeruginosa
|
|
|
|
|
|
X |
|
|
|
X |
|
X |
X |
|
|
|
|
|
|
|
|
|
|
X |
X |
|
|
|
|
species
|
Raoultella ornithinolytica
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
species
|
Roseburia hominis
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
species
|
Roseburia intestinalis
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
X |
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
species
|
Roseburia inulinivorans
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
species
|
Ruminococcus albus
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
species
|
Ruminococcus bicirculans (ex Wegman et al. 2014)
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
species
|
Ruminococcus bromii
|
|
|
|
|
X |
X |
|
|
|
X |
|
X |
X |
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
species
|
Ruminococcus champanellensis
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
species
|
Saccharomyces cerevisiae
|
|
|
|
|
|
|
|
X |
|
|
|
|
X |
|
|
|
X |
X |
|
|
|
|
|
|
|
|
|
|
|
species
|
Segatella copri
|
|
|
|
|
|
|
|
X |
|
|
|
X |
|
X |
|
|
X |
X |
|
|
|
|
X |
|
X |
|
|
|
|
species
|
Serratia marcescens
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
species
|
Solobacterium moorei
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
species
|
Staphylococcus aureus
|
|
|
|
|
|
X |
|
|
|
X |
|
X |
|
|
X |
|
X |
|
|
|
|
|
|
X |
X |
|
|
|
|
species
|
Staphylococcus epidermidis
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
species
|
Staphylococcus pasteuri
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
species
|
Streptococcus agalactiae
|
|
|
|
|
|
|
|
|
|
|
|
X |
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
species
|
Streptococcus anginosus
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
species
|
Streptococcus mutans
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
species
|
Streptococcus parasanguinis
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
species
|
Streptococcus pneumoniae
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
species
|
Streptococcus pyogenes
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
species
|
Streptococcus salivarius
|
|
X |
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
species
|
Streptococcus sanguinis
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
species
|
Subdoligranulum variabile
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
species
|
Thomasclavelia ramosa
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
species
|
Vibrio cholerae
|
|
|
|
|
|
X |
|
|
|
X |
|
|
X |
X |
|
|
|
|
|
|
|
|
|
X |
X |
|
|
|
|
species
|
Vibrio parahaemolyticus
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
species
|
Vibrio vulnificus
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
species
|
Yersinia enterocolitica
|
|
|
|
|
|
X |
|
|
|
X |
|
X |
|
X |
|
|
|
|
|
|
|
|
|
X |
X |
|
|
|
|
species group
|
Streptococcus anginosus group
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
subspecies
|
Bifidobacterium animalis subsp. lactis
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
subspecies
|
Bifidobacterium longum subsp. infantis
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
subspecies
|
Lactobacillus delbrueckii subsp. bulgaricus
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
subspecies
|
Mycobacterium avium subsp. paratuberculosis
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
X |
|
|
|
|
|